SATAY pipeline at Delft :)
Status of the project
Data analysis steps
Flowchart of the pipeline
Software installation guide for whole genome sequencing and transposon mapping
All what you need to know from SATAY
How to use the pipeline in the docker container
Code for the bash GUI
Python scripts
Cleaning bed and wig files
Transposon profile for the whole genome
Transposon profile for a chromosome of interest
Create a scatterplot for all genes and all essential genes.
Volcano plots to two different libraries
Searching for genomic features of transposition events
Build your own docker container with ours satay pipeline
Contributing guidelines for developers
Code of Conduct
.md
.pdf
repository
open issue
Code for the bash GUI
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Click here to see the code!
Go to the main repository to see the code!
How to use the pipeline in the docker container
Python scripts
