Hello there 😄 Welcome to this Jupyter Book instance to document our data processing pipeline to analyze data from the technique : Saturated Transposition Analysis in Yeast.
Status of the project¶
Next steps¶
Publication in JOSS ✍
Make the software package ready to be published in Journal of Open Source Software
Reproducible data analysis 🚀
Reproducible data analysis through a configuration file.
e.g. Make a manifest (docker compose)
Multiple files analysis 🎁
Allow mulitple files to be processed at once using a for-loop in the bash script. Currently only one dataset at the time can be processed, but this can be extended to allow a series of datasets to be processed in a for-loop.
Python package 🛰
Build a python package that is pip installable for the ease of use for other researchers.
Learn more and get involved
- 💡 Open an issue
We track enhancement requests, bug-reports, and to-do items via GitHub issues.
- 🙌 Send a pull request
We appreciate that contributors send a pull request to improve the code base or introduce a new feature.
What do we have currently?¶
Software License¶
Current Contact¶
Leila Inigo de la Cruz
email: L.M.InigoDeLaCruz@tudelft.nl
Acknowledgements 💙¶
Many thanks to the group of Prof. Benoit Kornmann , in particular to Prof. Agnes Michel , for all the nice discussions and colaboration with our team. Also thanks to them due to the SATAY forum they keep on running for all the community of satayers 🎉 .
Many thanks to the DCC department at TU Delft, specially to Maurits Kok who in his role of Research Software Engineer has supported us in developing the software package to be distributed to the scientific community.