repository open issue

Index

A

add_chromosome_length() (in module transposonmapper.mapping)

add_chromosome_length_inserts() (in module transposonmapper.mapping) apply_stats() (in module transposonmapper.statistics)

B

binned_list() (in module transposonmapper.processing)

build_dataframe() (in module transposonmapper.processing)

C

checking_features() (in module transposonmapper.processing) chromosome_name_bedfile() (in module transposonmapper.processing) chromosome_position() (in module transposonmapper.properties)

cleanfiles() (in module transposonmapper.processing) correct_read_position() (in module transposonmapper.mapping) counts_genome() (in module transposonmapper.processing)

D

dataframe_from_pergenefile() (in module transposonmapper.statistics)

dna_features() (in module transposonmapper.processing) dna_features_plot() (in module transposonmapper.plotting)

E

essential_genes() (in module transposonmapper.statistics)

F

feature_position() (in module transposonmapper.processing)

find_chromosome_reads() (in module transposonmapper.mapping)

G

gene_aliases() (in module transposonmapper.properties) gene_location() (in module transposonmapper.processing) gene_position() (in module transposonmapper.properties) get_chromosome_names() (in module transposonmapper.properties)

get_chromosome_reads() (in module transposonmapper.properties) get_coordinates_genes() (in module transposonmapper.properties) get_insertions_and_reads() (in module transposonmapper.mapping) get_reads() (in module transposonmapper.mapping) get_sequence_length() (in module transposonmapper.properties)

I

info_from_datasets() (in module transposonmapper.statistics)

input_region() (in module transposonmapper.processing) intergenic_regions() (in module transposonmapper.processing)

L

length_genome() (in module transposonmapper.processing) list_gene_names() (in module transposonmapper.properties)

list_known_essentials() (in module transposonmapper.processing) load_default_files() (in module transposonmapper.importing) load_sgd_tab() (in module transposonmapper.importing)

M

make_datafile() (in module transposonmapper.statistics) middle_chrom_pos() (in module transposonmapper.processing) module transposonmapper.exporting transposonmapper.importing transposonmapper.mapping transposonmapper.plotting transposonmapper.processing transposonmapper.properties transposonmapper.statistics

P

profile_genome() (in module transposonmapper.processing)

profile_genome_plot() (in module transposonmapper.plotting)

R

read_genes() (in module transposonmapper.importing) read_pergene_file() (in module transposonmapper.processing) (in module transposonmapper.statistics)

read_wig_file() (in module transposonmapper.processing) reads_per_insertion() (in module transposonmapper.statistics)

S

save_as_bed() (in module transposonmapper.exporting) save_as_wig() (in module transposonmapper.exporting) save_per_essential_insertions() (in module transposonmapper.exporting)

save_per_gene() (in module transposonmapper.exporting) save_per_gene_insertions() (in module transposonmapper.exporting) sgd_features() (in module transposonmapper.processing) summed_chr() (in module transposonmapper.processing)

T

transposonmapper() (in module transposonmapper) transposonmapper.exporting module transposonmapper.importing module transposonmapper.mapping module

transposonmapper.plotting module transposonmapper.processing module transposonmapper.properties module transposonmapper.statistics module

V

volcano() (in module transposonmapper.statistics)